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Fridley, Brooke

One or more keywords matched the following items that are connected to Fridley, Brooke

Item Type	Name
Concept	Analysis of Variance
Concept	DNA Mutational Analysis
Concept	Factor Analysis, Statistical
Concept	Regression Analysis
Concept	Meta-Analysis as Topic
Concept	Multivariate Analysis
Concept	Cluster Analysis
Concept	Survival Analysis
Concept	Sequence Analysis, DNA
Concept	Sequence Analysis, RNA
Concept	Oligonucleotide Array Sequence Analysis
Concept	Principal Component Analysis
Concept	Tissue Array Analysis
Concept	Mendelian Randomization Analysis
Concept	Single-Cell Analysis
Academic Article	Robust gene expression and mutation analyses of RNA-sequencing of formalin-fixed diagnostic tumor samples.
Academic Article	Assessment of data transformations for model-based clustering of RNA-Seq data.
Academic Article	Subject level clustering using a negative binomial model for small transcriptomic studies.
Academic Article	A Primer on Preprocessing, Visualization, Clustering, and Phenotyping of Barcode-Based Spatial Transcriptomics Data.
Academic Article	A harmonized resource of integrated prostate cancer clinical, -omic, and signature features.
Academic Article	Statistical Methods for Integrative Clustering of Multi-omics Data.
Academic Article	Contribution of FKBP5 genetic variation to gemcitabine treatment and survival in pancreatic adenocarcinoma.
Academic Article	Soft truncation thresholding for gene set analysis of RNA-seq data: application to a vaccine study.
Academic Article	Integrative gene set analysis: application to platinum pharmacogenomics.
Academic Article	Integrative genomic analysis identifies epigenetic marks that mediate genetic risk for epithelial ovarian cancer.
Academic Article	Clinical characteristics of ovarian cancer classified by BRCA1, BRCA2, and RAD51C status.
Academic Article	Acquired chromosomal anomalies in chronic lymphocytic leukemia patients compared with more than 50,000 quasi-normal participants.
Academic Article	Methylation of leukocyte DNA and ovarian cancer: relationships with disease status and outcome.
Academic Article	Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33.
Academic Article	Consortium analysis of gene and gene-folate interactions in purine and pyrimidine metabolism pathways with ovarian carcinoma risk.
Academic Article	Evidence for a time-dependent association between FOLR1 expression and survival from ovarian carcinoma: implications for clinical testing. An Ovarian Tumour Tissue Analysis consortium study.
Academic Article	Germline mutation in BRCA1 or BRCA2 and ten-year survival for women diagnosed with epithelial ovarian cancer.
Academic Article	Candidate locus analysis of the TERT-CLPTM1L cancer risk region on chromosome 5p15 identifies multiple independent variants associated with endometrial cancer risk.
Academic Article	Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity.
Academic Article	Genome-wide Analysis Identifies Novel Loci Associated with Ovarian Cancer Outcomes: Findings from the Ovarian Cancer Association Consortium.
Academic Article	Shared genetics underlying epidemiological association between endometriosis and ovarian cancer.
Academic Article	Comprehensive genetic assessment of the ESR1 locus identifies a risk region for endometrial cancer.
Academic Article	Cis-eQTL analysis and functional validation of candidate susceptibility genes for high-grade serous ovarian cancer.
Academic Article	Prior oral contraceptive use in ovarian cancer patients: assessing associations with overall and progression-free survival.
Academic Article	Meta-analysis of genome-wide association studies identifies common susceptibility polymorphisms for colorectal and endometrial cancer near SH2B3 and TSHZ1.
Academic Article	Clinical and Emergent Biomarkers and Their Relationship to the Prognosis of Ovarian Cancer.
Academic Article	A targeted genetic association study of epithelial ovarian cancer susceptibility.
Academic Article	The association between socioeconomic status and tumour stage at diagnosis of ovarian cancer: A pooled analysis of 18 case-control studies.
Academic Article	InterSIM: Simulation tool for multiple integrative 'omic datasets'.
Academic Article	Five endometrial cancer risk loci identified through genome-wide association analysis.
Academic Article	Adult body mass index and risk of ovarian cancer by subtype: a Mendelian randomization study.
Academic Article	Genetic Risk Score Mendelian Randomization Shows that Obesity Measured as Body Mass Index, but not Waist:Hip Ratio, Is Causal for Endometrial Cancer.
Academic Article	Association of vitamin D levels and risk of ovarian cancer: a Mendelian randomization study.
Academic Article	Comprehensive Cross-Population Analysis of High-Grade Serous Ovarian Cancer Supports No More Than Three Subtypes.
Academic Article	Genetic variations associated with gemcitabine treatment outcome in pancreatic cancer.
Academic Article	Cigarette smoking is associated with adverse survival among women with ovarian cancer: Results from a pooled analysis of 19 studies.
Academic Article	Identification of 12 new susceptibility loci for different histotypes of epithelial ovarian cancer.
Academic Article	Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm.
Academic Article	Robust Tests for Additive Gene-Environment Interaction in Case-Control Studies Using Gene-Environment Independence.
Academic Article	Dose-Response Association of CD8+ Tumor-Infiltrating Lymphocytes and Survival Time in High-Grade Serous Ovarian Cancer.
Academic Article	An integrative approach to assess X-chromosome inactivation using allele-specific expression with applications to epithelial ovarian cancer.
Academic Article	Gene Expression, and Fatigue in Puerto Rican Men during Radiotherapy for Prostate Cancer: an Exploratory Study.
Academic Article	Mediation analysis of alcohol consumption, DNA methylation, and epithelial ovarian cancer.
Academic Article	Genomic Analysis Using Regularized Regression in High-Grade Serous Ovarian Cancer.
Academic Article	Adult height is associated with increased risk of ovarian cancer: a Mendelian randomisation study.
Academic Article	Comparison of normalization approaches for gene expression studies completed with high-throughput sequencing.
Academic Article	A Curated Cancer Clinical Outcomes Database (C3OD) for accelerating patient recruitment in cancer clinical trials.
Academic Article	Molecular signatures of X chromosome inactivation and associations with clinical outcomes in epithelial ovarian cancer.
Academic Article	Genome-wide Analysis of Common Copy Number Variation and Epithelial Ovarian Cancer Risk.
Academic Article	GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis.
Academic Article	Network-based integrative clustering of multiple types of genomic data using non-negative matrix factorization.
Academic Article	Mendelian randomization analyses suggest a role for cholesterol in the development of endometrial cancer.
Academic Article	Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments.
Academic Article	Challenges and Opportunities in the Statistical Analysis of Multiplex Immunofluorescence Data.
Academic Article	spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data.
Academic Article	Summarizing internal dynamics boosts differential analysis and functional interpretation of super enhancers.
Academic Article	Tumor immune cell clustering and its association with survival in African American women with ovarian cancer.
Academic Article	spatialGE: quantification and visualization of the tumor microenvironment heterogeneity using spatial transcriptomics.
Academic Article	Statistics and Machine Learning in Mass Spectrometry-Based Metabolomics Analysis.
Academic Article	Statistical analysis of single-cell protein data.
Academic Article	Spatial transcriptomics analysis identifies a unique tumor-promoting function of the meningeal stroma in melanoma leptomeningeal disease.
Academic Article	Diagnostic tools in linkage analysis for quantitative traits.
Academic Article	Imputation methods for missing data for polygenic models.
Academic Article	Missing phenotype data imputation in pedigree data analysis.
Academic Article	Host genetic variation contributes to phenotypic diversity in myeloproliferative disorders.
Academic Article	Model selection and Bayesian methods in statistical genetics: summary of group 11 contributions to Genetic Analysis Workshop 15.
Academic Article	Human phenylethanolamine N-methyltransferase genetic polymorphisms and exercise-induced epinephrine release.
Academic Article	Toll-like receptor polymorphisms and age-related macular degeneration.
Academic Article	Analysis of variation in NF-kappaB genes and expression levels of NF-kappaB-regulated molecules.
Academic Article	Linkage analysis using principal components of gene expression data.
Academic Article	Proteasome beta subunit pharmacogenomics: gene resequencing and functional genomics.
Academic Article	Density of common complex ocular traits in the aging eye: analysis of secondary traits in genome-wide association studies.
Academic Article	Genomic association analysis suggests chromosome 12 locus influencing antihypertensive response to thiazide diuretic.
Academic Article	Methods for analysis in pharmacogenomics: lessons from the Pharmacogenetics Research Network Analysis Group.
Academic Article	Genome-wide linkage analysis for uric acid in families enriched for hypertension.
Academic Article	Candidate gene analysis using imputed genotypes: cell cycle single-nucleotide polymorphisms and ovarian cancer risk.
Academic Article	Cell cycle genes and ovarian cancer susceptibility: a tagSNP analysis.
Academic Article	Gemcitabine and arabinosylcytosin pharmacogenomics: genome-wide association and drug response biomarkers.
Academic Article	Conference Scene: Lessons learned from the 5th Statistical Analysis Workshop of the Pharmacogenetics Research Network.
Academic Article	Common variants at 19p13 are associated with susceptibility to ovarian cancer.
Academic Article	Self-contained gene-set analysis of expression data: an evaluation of existing and novel methods.
Academic Article	Radiation pharmacogenomics: a genome-wide association approach to identify radiation response biomarkers using human lymphoblastoid cell lines.
Academic Article	Multivariate models to detect genomic signatures for a class of drugs: application to thiopurines pharmacogenomics.
Academic Article	Acetaminophen-NAPQI hepatotoxicity: a cell line model system genome-wide association study.
Academic Article	Gene set analysis of SNP data: benefits, challenges, and future directions.
Academic Article	Platinum sensitivity-related germline polymorphism discovered via a cell-based approach and analysis of its association with outcome in ovarian cancer patients.
Academic Article	Gene set analysis of purine and pyrimidine antimetabolites cancer therapies.
Academic Article	Comparison of Penalty Functions for Sparse Canonical Correlation Analysis.
Academic Article	Meta-analysis of 8q24 for seven cancers reveals a locus between NOV and ENPP2 associated with cancer development.
Academic Article	Use of the gamma method for self-contained gene-set analysis of SNP data.
Academic Article	Serine hydroxymethyltransferase 1 and 2: gene sequence variation and functional genomic characterization.
Academic Article	Association between BRCA1 and BRCA2 mutations and survival in women with invasive epithelial ovarian cancer.
Academic Article	Gene set analysis of survival following ovarian cancer implicates macrolide binding and intracellular signaling genes.
Academic Article	Association between endometriosis and risk of histological subtypes of ovarian cancer: a pooled analysis of case-control studies.
Academic Article	Genetic association studies of copy-number variation: should assignment of copy number states precede testing?
Academic Article	A Bayesian integrative genomic model for pathway analysis of complex traits.
Academic Article	Genome-wide gene-set analysis for identification of pathways associated with alcohol dependence.
Academic Article	Simultaneous analysis of multiple data types in pharmacogenomic studies using weighted sparse canonical correlation analysis.
Academic Article	Human liver methionine cycle: MAT1A and GNMT gene resequencing, functional genomics, and hepatic genotype-phenotype correlation.
Academic Article	Genome-wide association study of glioma and meta-analysis.
Academic Article	Identifying the genetic variation of gene expression using gene sets: application of novel gene Set eQTL approach to PharmGKB and KEGG.
Academic Article	A low-frequency variant at 8q24.21 is strongly associated with risk of oligodendroglial tumors and astrocytomas with IDH1 or IDH2 mutation.
Academic Article	Genetic association with overall survival of taxane-treated lung cancer patients - a genome-wide association study in human lymphoblastoid cell lines followed by a clinical association study.
Academic Article	Cigarette smoking and risk of ovarian cancer: a pooled analysis of 21 case-control studies.
Academic Article	Analysis of over 10,000 Cases finds no association between previously reported candidate polymorphisms and ovarian cancer outcome.
Academic Article	Epigenetic analysis leads to identification of HNF1B as a subtype-specific susceptibility gene for ovarian cancer.
Academic Article	GWAS meta-analysis and replication identifies three new susceptibility loci for ovarian cancer.
Academic Article	Multiple independent variants at the TERT locus are associated with telomere length and risks of breast and ovarian cancer.
Academic Article	Epigenome-wide ovarian cancer analysis identifies a methylation profile differentiating clear-cell histology with epigenetic silencing of the HERG K+ channel.
Academic Article	Kernel canonical correlation analysis for assessing gene-gene interactions and application to ovarian cancer.
Academic Article	Hormone-receptor expression and ovarian cancer survival: an Ovarian Tumor Tissue Analysis consortium study.
Academic Article	Biomarker-based ovarian carcinoma typing: a histologic investigation in the ovarian tumor tissue analysis consortium.
Academic Article	ABCB1 (MDR1) polymorphisms and ovarian cancer progression and survival: a comprehensive analysis from the Ovarian Cancer Association Consortium and The Cancer Genome Atlas.

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