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One or more keywords matched the following properties of Sampath, Venkatesh

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keywords Toll Like Receptor 4
keywords Single Ig IL-1-related receptor (SIGIRR)
research overview The focus of our program is to understand the “why” and “how” behind neonates developing diseases, with the ultimate goal of preventing or curing this patient population. We begin with disease phenotypes and investigate the pathogenic mechanisms underlying disease evolution to guide the development of novel future therapies. The phenotypes of interest to our program are necrotizing enterocolitis (NEC), Bronchopulmonary dysplasia (BPD), and rare infectious diseases such as Herpes Simplex virus (HSV), Group B Streptococcus (GBS), and SARS-CoV-2. Our program has adopted a “research without boundaries” approach, which integrates classical “basic”, “clinical” and “translational” strategies. We use human genomic studies, rodent disease models, in vitro studies, and bioinformatics to study mechanisms underlying disease pathogenesis, and testing therapeutic options. Our research vision aligns well with the goals of the CMRI to improve the health of children through multi-disciplinary research. The three major areas of our research focus include: Neonatal Diseases Research Program 1. Vascular remodeling and sub-phenotypes in BPD Investigate dysmorphic vascular arborization in the normal and abnormal lung (BPD). Genomic-Phenomic characterization of BPD sub-phenotypes. 2. Deviant host-pathogen crosstalk in NEC & sepsis Determine how genetic loci program deviant host-pathogen interactions underlying NEC and sepsis phenotypes in neonates. 3. Genomic-Phenomic characterization of neonatal disease susceptibility Discover genetic, phenomic, and transcriptomic signatures that underpin susceptibility to GBS, NEC, and HVS in neonates. Pillars of research program: The cornerstones of our program are phenotype-based research, emphasis on innovation and paradigm-shifting ideas, developing precision tools for phenotype characterization and therapeutics, and emphasis on training future generations of researchers. Accomplishments of our program: At a personal level, and as a research team we have had considerable success in terms of research publications, presentations, and awards at national/ international conferences, intramural and extramural NIH funding, and importantly in discovering and advancing science. A comprehensive list of our research achievements at Children’s Mercy Hospital over the last four years is presented in the subsequent pages. Long-term goal: Our long-term goal is to build an internationally renowned program in neonatal/perinatal research by integrating the skill sets of a diverse team of motivated scientists and collaborators. We will use the knowledge obtained through our investigations to develop precision tools for identifying infants at risk of disease and develop novel treatment strategies to prevent disease. These are commiserated with the CMRI and the NIH vision to promote research that advances the practice of personalized medicine. In subsequent sections, we will highlight the major accomplishments of our program. Support from the CMRI is critical for accomplishing our goals and will establish our program as an international center for research excellence in 5-7 years. Major Scientific Discoveries and Programmatic Accomplishments. 2a - Neonatal Lung Injury and Development: We investigate key modulators of lung endothelial/vascular development and lung injury using models relevant to bronchopulmonary dysplasia (BPD), the most common, debilitating lung disease in premature infants. Key discoveries include establishing a model of sepsis-induced lung remodeling, the discovery of the role of delta-like 4 (DLL4) as a novel regulator of lung vascular and epithelial development [front cover (JCI insights) and editorial (JCI)] and unearthing transcriptional regulation of lung endothelial inflammation [FOSL1 and FOXC2;]. Kindly see section 4 under manuscripts published for a reference list. More recently, we have developed, what I believe is one of the first systemic models for studying systemic SARS-CoV2-induced lung injury. 2b - Combining Genomics, Phenomics and Health Outcomes to Sub-classify BPD: We are pursuing exome sequencing to classify BPD sub-phenotypes in collaboration with the genome center [Drs. Pastinen and Dr. Smail]. In partnership with Drs. Manimtim and Akangire (Neonatology), we will use deep phenotyping and functional phenotyping on BPD infants to characterize BPD sub-phenotypes. Reconciling genetic with phenomic data will provide precision tools to characterize a complex disease and aid the development of phenotype-based approaches for BPD treatment. We have completed sequencing >900 preterm infants with and without BPD, making our study the largest exome study in preterm neonates to date. This maintains our leadership role in neonatal genomics. 2c - BPD therapeutics: More recently we have used our deep understanding on neonatal pathophysiology to probe new therapeutic options for BPD. In collaboration with Drs. Donald DeFranco [Professor & Vice Chair for Medical Education, UPMC], an expert in glucocorticoid signaling, and Dr. Paula Nichols [Professor, Associate Dean for Research, UMKC], we are performing basic and clinical studies on ciclesonide, a synthetic glucocorticoid, as a brain-sparing alternative to dexamethasone therapy for BPD. We have also initiated an industry partnership with COVIS Pharmaceuticals. We have just submitted an R21 application to fund a Phase 1 trial of ciclesonide in babies. 2d - Gene-Microbiota Interactions in NEC: Our focus is on understanding how host genetic variation interacts with developing gut microbiome to modulate the risk of necrotizing enterocolitis, a devastating gastrointestinal illness in preterm infants. Key contributions include identifying potential loci that modulate NEC susceptibility including SIGIRR and ATG16L1. Our research has led to a novel hypothesis for NEC i.e., genetic dysregulation of innate immune response underlies NEC pathogenesis. A major discovery identified SIGIRR regulates postnatal gut adaptation in neonatal mice, and loss of function mutations result in hypersensitivity to gut microbiota-induced inflammation [CMGH Front Cover and editorial]. 2e - NEC Genomics: Our lab has led the field of NEC Genomics with several publications. Recently, we have been analyzing the data from the first exome sequencing study in preterm NEC enrolling >900 infants. We hope to identify several loci that portend NEC vulnerability, laying the path for genetic screening to identifying infants at the highest risk of NEC. 2f - NEC therapeutics: Informed by the work of other investigators and our studies showing the efficacy of probiotics in NEC, we have successfully implemented probiotics to prevent NEC in the CMH-ICN in April 2021. This has resulted in a meaningful reduction in NEC in our infants. This reflects a direct bench-to-bedside translation of our work. We are also working on metabolites such as short-chain fatty acids as a bacteria-free preventive option for NEC. 2g - Genetics of rare neonatal infectious disease and undiagnosed lethal diseases: Our program has had a long-standing interest in severe neonatal Herpes Simplex infections and Group B streptococci. Our lab first discovered that severe neonatal HSV may have a genetic basis using a simple exome survey our ongoing work has identified IRF7 as a potential genetic loci for severe, recurrent neonatal HSV [accepted, Journal of Clinical Investigation]. Once this work is published, it is possibly one of the first human phenotypes for IRF7 mutations. Our ability to do functional studies for VUS has allowed us to identify genetic basis for rare, lethal disease, and return this information to parents for counseling. A recent illustration of this functional genomic work was done with colleagues in the genome center [EPHB4 mutation in neonatal hydrops, Pediatrics]. Programmatic accomplishments: The major accomplishment of our program apart from scientific discovery is establishing institutional, national, and international collaborations which have significantly elevated the status of our program, Neonatology, Pediatrics, and the CMRI nationally. This has resulted in bringing new research projects to Neonatology [NANO NICHD study, PI: Dr. Morowitz, UPMC], LEOPARD [multi-center BPD genomics study, PI: Dr. Hamvas, Northwestern University], and industry [partnership with COVIS is pending]. Our dedication to breaking “silos” has resulted in several fruitful collaborations. Some of these major collaborations are highlighted below. CMH collaborations a) CMKC-Neonatology: Dr. Sampath actively collaborates with the clinical bronchopulmonary dysplasia (BPD) program faculty including Drs. Manimtim and Akangire. Mentoring relationships are highlighted in a different section. b) CMKC – Genomics: Dr. Sampath has active collaborations with Drs. Pastinen, Farrow, Smail, Younger, and Grundberg for our rare and common disease genetic discovery program. c) CMKC – Infectious Disease: Dr. Sampath has an active collaboration with Dr. Susana Chavez Bueno. Our focus is on dissecting the host and bacterial factors determining neonatal E.Coli sepsis. d) CMKC – Allergy Immunology: Dr. Sampath has an active collaboration with Dr. Nikita Raje on understanding immunological basis of rare infectious diseases as well as T cell abnormalities and thymic hypoplasia in DeGeorge syndrome. e) CMKC – Dr. Lane’s lab: Dr. Sampath actively collaborates with Dr. Lane’s lab on the role of DLL4 in neonatal brain development/injury and epigenetic regulation of neonatal/perinatal pathology. Local collaborations a) Dr. Shahid Umar*: We have a long-standing collaboration with Dr. Umar to investigate the emerging gut microbiota in the context of NEC and host genetics. b) Dr. Paula Nichols*: We collaborate on the role of glucocorticoids signaling in neonatal lung and brain injury including testing new synthetic glucocorticoids with less brain toxicity. National and International Collaborations a) Genomics collaborations: We have active collaborations with several PI’s in institutions across the country. Prominent among those include Drs. Dagle (Iowa Children’s Hospital), Good (UNC, North Carolina), Patel (Emory, Atlanta), Underwood (UC Davis, California), Berrington (Newcastle, UK) and others. b) Genome-Microbiome Interactions*: We collaborate with Dr. Morowitz (UPMC, Pittsburgh) as part of the NICHD-funded NANO clinical trial and a Pilot March of Dimes Grant. c) New steroid for preventing BPD in premature infants*: We collaborate with Dr. DeFranco (UPMC) to examine the efficacy of ciclesonide, a brain-sparing synthetic glucocorticoid, in preventing neonatal lung injury without causing neuronal and myelination damage. d) Collaborations in lung vascular biology*: We collaborate with Dr. Ramchandran (MCW, Wisconsin) and Dr. Chen (MD Anderson, Texas) in lung biology. Partnership with industry (Pending) a) Ciclesonide clinical trial: We are in advanced negotiations with COVIS Pharmaceuticals to obtain funding to sponsor a pilot clinical trial of ciclesonide in preterm infants. Once the Phase 1 study is completed we plan to initiate a larger RCT.

One or more keywords matched the following items that are connected to Sampath, Venkatesh

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Concept Gastrointestinal Microbiome
Concept Pyroptosis
Concept Acidosis
Concept Acute Disease
Concept Anti-Infective Agents
Concept Anti-Inflammatory Agents
Concept Anti-Bacterial Agents
Concept Antioxidants
Concept Autophagy
Concept Bilirubin
Concept Birth Weight
Concept Body Weight
Concept Brain
Concept Breast Feeding
Concept Bronchopulmonary Dysplasia
Concept Butyrates
Concept C-Reactive Protein
Concept Calcium-Binding Proteins
Concept Cerebellum
Concept Cerebral Cortex
Concept Chromatography, High Pressure Liquid
Concept Colitis
Concept Colon
Concept Complement C6
Concept Complement C7
Concept Diffusion of Innovation
Concept Endotoxins
Concept Enzyme-Linked Immunosorbent Assay
Concept Escherichia coli
Concept Fermentation
Concept Hemodynamics
Concept Humans
Concept Ileum
Concept Immunoglobulins
Concept Interleukin-1
Concept Intestinal Mucosa
Concept Leukocytes, Mononuclear
Concept Lipopolysaccharides
Concept Longitudinal Studies
Concept Mice, Inbred C3H
Concept Mice, Inbred C57BL
Concept Mice, Mutant Strains
Concept Mice, Transgenic
Concept Milk, Human
Concept Organ Size
Concept Oximetry
Concept Oxygen
Concept Patient Discharge
Concept Phosphorylation
Concept Promoter Regions, Genetic
Concept Prospective Studies
Concept Protein Processing, Post-Translational
Concept Proteus mirabilis
Concept Pulmonary Artery
Concept Receptors, Glucocorticoid
Concept Regeneration
Concept Retrospective Studies
Concept RNA, Ribosomal, 16S
Concept Severity of Illness Index
Concept Sheep
Concept Superoxides
Concept Transcription, Genetic
Concept Tumor Necrosis Factor-alpha
Concept Hydrops Fetalis
Concept Cohort Studies
Concept Signal Transduction
Concept Biomarkers
Concept Weight Gain
Concept Up-Regulation
Concept Intensive Care, Neonatal
Concept Case-Control Studies
Concept Interleukin-8
Concept Bacteremia
Concept Helicobacter pylori
Concept Proto-Oncogene Proteins c-fos
Concept Rats, Sprague-Dawley
Concept Apoptosis
Concept Receptors, Interleukin-1
Concept Herpesvirus 1, Human
Concept Mice, Knockout
Concept Codon, Terminator
Concept Intercellular Adhesion Molecule-1
Concept Transcription Factor AP-1
Concept Neovascularization, Physiologic
Concept Chemokines
Concept Chemokine CCL2
Concept Tight Junctions
Concept Endotoxemia
Concept Mitogen-Activated Protein Kinase 1
Concept Stroke
Concept Polymorphism, Single Nucleotide
Concept Encephalitis, Herpes Simplex
Concept Asperger Syndrome
Concept Protein Transport
Concept Active Transport, Cell Nucleus
Concept Genomics
Concept Membrane Transport Proteins
Concept RNA, Small Interfering
Concept MicroRNAs
Concept Receptor, EphB4
Concept Infant Formula
Concept Vascular Endothelial Growth Factor A
Concept Angiopoietin-1
Concept Angiopoietin-2
Concept Receptor, TIE-2
Concept Receptors, G-Protein-Coupled
Concept Citrobacter rodentium
Concept Biodiversity
Concept HCT116 Cells
Concept Cell Line, Tumor
Concept TNF Receptor-Associated Factor 3
Concept Mitogen-Activated Protein Kinase 3
Concept Adaptor Proteins, Signal Transducing
Concept STAT1 Transcription Factor
Concept STAT3 Transcription Factor
Concept Interferon Regulatory Factor-3
Concept Scavenger Receptors, Class A
Concept Frizzled Receptors
Concept Toll-Like Receptors
Concept Toll-Like Receptor 2
Concept Toll-Like Receptor 3
Concept Toll-Like Receptor 4
Concept Toll-Like Receptor 5
Concept Toll-Like Receptor 9
Concept NF-E2-Related Factor 2
Concept Mitochondrial Membranes
Concept Mice
Concept GRB2 Adaptor Protein
Concept Rats
Concept Receptors, Notch
Concept Receptor, Notch1
Concept NF-kappa B p50 Subunit
Concept CARD Signaling Adaptor Proteins
Concept Nod2 Signaling Adaptor Protein
Concept Nod1 Signaling Adaptor Protein
Concept Receptor-Interacting Protein Serine-Threonine Kinase 2
Concept Matrix Metalloproteinase 12
Concept Interleukin-1 Receptor-Associated Kinases
Concept Myeloid Differentiation Factor 88
Concept Host-Pathogen Interactions
Concept Mucin-2
Concept Young Adult
Concept HEK293 Cells
Concept Transcriptome
Concept Wnt Signaling Pathway
Concept Low Density Lipoprotein Receptor-Related Protein-6
Concept Low Density Lipoprotein Receptor-Related Protein-5
Concept Antioxidant Response Elements
Concept Microbiota
Academic Article Risk factors for adverse neurodevelopment in extremely low birth weight infants with normal neonatal cranial ultrasound.
Academic Article Nonimmune hydrops fetalis and fulminant fatal disease due to congenital cytomegalovirus infection in a premature infant.
Academic Article Altered postnatal lung development in C3H/HeJ mice.
Academic Article Attenuation of lipopolysaccharide-induced oxidative stress and apoptosis in fetal pulmonary artery endothelial cells by hypoxia.
Academic Article Lipopolysaccharide-induced cytokine expression in alveolar epithelial cells: role of PKC?-mediated p47phox phosphorylation.
Academic Article The NFKB1 (g.-24519delATTG) variant is associated with necrotizing enterocolitis (NEC) in premature infants.
Academic Article A TLR5 (g.1174C?>?T) variant that encodes a stop codon (R392X) is associated with bronchopulmonary dysplasia.
Academic Article LPS-mediated endothelial activation in pulmonary endothelial cells: role of Nox2-dependent IKK-? phosphorylation.
Academic Article Antioxidant response genes sequence variants and BPD susceptibility in VLBW infants.
Academic Article Lipopolysaccharide (LPS)-mediated angiopoietin-2-dependent autocrine angiogenesis is regulated by NADPH oxidase 2 (Nox2) in human pulmonary microvascular endothelial cells.
Academic Article SIGIRR genetic variants in premature infants with necrotizing enterocolitis.
Academic Article A toll-like receptor 9 (rs352140) variant is associated with placental inflammation in newborn infants.
Academic Article Necrotizing Enterocolitis Is Not Associated With Sequence Variants in Antioxidant Response Genes in Premature Infants.
Academic Article Nicotinamide Adenine Dinucleotide Phosphate Oxidase 2 Regulates LPS-Induced Inflammation and Alveolar Remodeling in the Developing Lung.
Academic Article Placental TLR/NLR expression signatures are altered with gestational age and inflammation.
Academic Article Genetic alterations in necrotizing enterocolitis.
Academic Article A functional ATG16L1 (T300A) variant is associated with necrotizing enterocolitis in premature infants.
Academic Article Prospective Comparison of Enfamil and Similac Liquid Human Milk Fortifier on Clinical Outcomes in Premature Infants.
Academic Article A Potential Role for the NOD1 Variant (rs6958571) in Gram-Positive Blood Stream Infection in ELBW Infants.
Academic Article Single-Immunoglobulin Interleukin-1-Related Receptor regulates vulnerability to TLR4-mediated necrotizing enterocolitis in a mouse model.
Academic Article Endothelial immune activation programmes cell-fate decisions and angiogenesis by inducing angiogenesis regulator DLL4 through TLR4-ERK-FOXC2 signalling.
Academic Article DNMT and HDAC inhibitors together abrogate endotoxemia mediated macrophage death by STAT3-JMJD3 signaling.
Academic Article Genetic predisposition to necrotizing enterocolitis in premature infants: Current knowledge, challenges, and future directions.
Academic Article Enteric infection coupled with chronic Notch pathway inhibition alters colonic mucus composition leading to dysbiosis, barrier disruption and colitis.
Academic Article Co-localization of autophagy-related protein p62 with cancer stem cell marker dclk1 may hamper dclk1's elimination during colon cancer development and progression.
Academic Article Extended course of prednisolone in infants with severe bronchopulmonary dysplasia.
Academic Article Histone deacetylase 6 regulates endothelial MyD88-dependent canonical TLR signaling, lung inflammation, and alveolar remodeling in the developing lung.
Grant Single Immunoglobulin Interleukin-1 Related Receptor and necrotizing enterocolitis in premature infants
Grant Lipopolysaccharide-mediated oxidative stress and pulmonary vascular injury in Bro
Grant Inflammatory Angiogenesis in the Lung
Grant Single Immunoglobulin Interleukin-l Related Receptor (SIGIRR) and Escherichia coli Interactions in the Neonatal Gut
Grant Role of SIGIRR and Dysbiosis in Necrotizing Enterocolitis
Grant Role of SIGIRR and Microbiome in regulating intestinal inflammation in NEC
Grant SIGIRR mutations and pathogenesis of NEC in premature infants
Academic Article Intrauterine fetal monitoring
Academic Article Fungal cutaneous microbiome and host determinants in preterm and term neonates.
Academic Article Infection-induced signals generated at the plasma membrane epigenetically regulate Wnt signaling in vitro and in vivo.
Academic Article NEC-like intestinal injury is ameliorated by Lactobacillus rhamnosus GG in parallel with SIGIRR and A20 induction in neonatal mice.
Grant The NICU Antibiotics and Neonatal Outcomes (NANO) trial
Academic Article FOSL1 is a novel mediator of endotoxin/lipopolysaccharide-induced pulmonary angiogenic signaling.
Academic Article Immunity and Inflammation in Health and Disease: Emerging Roles of Nutraceuticals and Functional Foods In Immune Support" Eds S. Chatterjee, W. Jungriathmyr and D. Bagchi
Academic Article Impact of Maternal HbA1c Levels =6% and Race in Nondiabetic Pregnancies on Birthweight and Early Neonatal Hypoglycemia.
Academic Article Challenges in diagnosing necrotizing enterocolitis.
Academic Article Rare Genetic Variants in Immune Genes and Neonatal Herpes Simplex Viral Infections.
Academic Article Intestinal Stem Cell Development in the Neonatal Gut: Pathways Regulating Development and Relevance to Necrotizing Enterocolitis.
Academic Article Angiopoietin-1 protects against endotoxin-induced neonatal lung injury and alveolar simplification in mice.
Academic Article Ciclesonide activates glucocorticoid signaling in neonatal rat lung but does not trigger adverse effects in the cortex and cerebellum.
Academic Article DCLK1 isoforms and aberrant Notch signaling in the regulation of human and murine colitis.
Academic Article The Yin and the Yang of Transformative Research During the COVID-19 Pandemic-A Perspective.
Academic Article SIGIRR Mutation in Human Necrotizing Enterocolitis (NEC) Disrupts STAT3-Dependent microRNA Expression in Neonatal Gut.
Academic Article Postnatal Sepsis and Bronchopulmonary Dysplasia in Premature Infants: Mechanistic Insights into "New BPD".
Academic Article Dietary Interventions Ameliorate Infectious Colitis by Restoring the Microbiome and Promoting Stem Cell Proliferation in Mice.
Academic Article EPHB4 Mutation Suppresses PROX1 Expression and Disrupts Lymphatic Development in Neonatal Hydrops.
Academic Article Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.
Academic Article Current Understanding of Transfusion-associated Necrotizing Enterocolitis: Review of Clinical and Experimental Studies and a Call for More Definitive Evidence.
Grant A Safer Glucocorticoid to Treat Neonatal Lung Injury with Limited Adverse Neurologic Effects
Academic Article Preterm sepsis is associated with acute lung injury as measured by pulmonary severity score.
Academic Article Effect of Various Preterm Infant Milk Formulas on NEC-Like Gut Injury in Mice.
Academic Article Adverse maternal environment alters Oprl1 variant expression in mouse hippocampus.
Academic Article Short-chain fatty acids ameliorate necrotizing enterocolitis-like intestinal injury through enhancing Notch1-mediated single immunoglobulin interleukin-1-related receptor, toll-interacting protein, and A20 induction.
Academic Article Necrotizing enterocolitis in premature infants-A defect in the brakes? Evidence from clinical and animal studies.
Academic Article Early antibiotics and risk for necrotizing enterocolitis in premature infants: A narrative review.
Academic Article The SARS-CoV-2 E protein induces Toll-like receptor 2-mediated neonatal lung injury in a model of COVID-19 viremia that is rescued by the glucocorticoid ciclesonide.
Academic Article IRF7 and UNC93B1 variants in an infant with recurrent herpes simplex virus infection.
Academic Article Endothelial FOXC1 and FOXC2 promote intestinal regeneration after ischemia-reperfusion injury.
Academic Article The Detrimental Effects of Peripartum Antibiotics on Gut Proliferation and Formula Feeding Injury in Neonatal Mice Are Alleviated with Lactobacillus rhamnosus GG.
Academic Article Impact of feeding volumes in the first 24 h of life on neonatal feeding intolerance.
Academic Article HDAC6 and ERK/ADAM17 Regulate VEGF-Induced NOTCH Signaling in Lung Endothelial Cells.
Academic Article Mechanisms of Endothelial Cell Membrane Repair: Progress and Perspectives.
Academic Article Butyrate suppresses experimental necrotizing enterocolitis-induced brain injury in mice.
Academic Article Triggered - does maternal COVID-19 program an exaggerated immune response in neonates?
Academic Article Correction: Triggered - does maternal COVID-19 program an exaggerated immune response in neonates?
Academic Article SARS-CoV-2 envelope protein regulates innate immune tolerance.
Academic Article Delta like 4 regulates cerebrovascular development and endothelial integrity via DLL4-NOTCH-CLDN5 pathway and is vulnerable to neonatal hyperoxia.
Academic Article The SafeBoosC-III trial and the future of cerebral oximetry-guided interventions in preterm infants-time to pause and reset?
Academic Article Intestinal Crypt Apoptosis as an Orchestrator of Necrotizing Enterocolitis: A New Mechanism?
Academic Article Insight Into Severe Neonatal COVID-19 Gained Through Whole Exome Sequencing of Twin Neonates.
Academic Article Understanding necrotizing enterocolitis endotypes and acquired intestinal injury phenotypes from a historical and artificial intelligence perspective.
Academic Article Lactobacillus rhamnosus modulates murine neonatal gut microbiota and inflammation caused by pathogenic Escherichia coli.
Academic Article Physiologic and structural characterization of desisobutyryl-ciclesonide, a selective glucocorticoid receptor modulator in newborn rats.
Academic Article The immunogenetic basis of severe herpes simplex infections in neonates and children: a review.

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