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Cheung, Warren

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Long Read Sequence Analysis

research overview

Dr. Cheung’s research interests involve exploring the elegance of computational algorithms, focused in the myriad of diverse application domains of bioinformatics. His current ongoing projects involve high-throughput epigenomics datasets and associated data, interrogating the interplay between the genome, methylome, transcriptome, chromatin histone mark deposition and accessibility. Dr. Cheung previously worked on the epigenomics of pediatric glioblastomas, and his interests have also ranged as far as the inference of novel associations from medical subject annotations in the PubMed biomedical database, privacy in epigenomics and medical image analysis. He is currently focusing on simultaneous aggregate analysis of multiple single-cell transcriptomics from the 10X platforms, and bridging this with methylation and other datasets in human blood immune cell types.

One or more keywords matched the following items that are connected to Cheung, Warren

Item Type	Name
Concept	Cluster Analysis
Concept	Sequence Analysis, DNA
Concept	Single-Cell Analysis
Academic Article	Epigenome data release: a participant-centered approach to privacy protection.
Academic Article	Whole-genome sequencing identifies EN1 as a determinant of bone density and fracture.
Academic Article	Dissecting features of epigenetic variants underlying cardiometabolic risk using full-resolution epigenome profiling in regulatory elements.
Academic Article	Quantitative biomedical annotation using medical subject heading over-representation profiles (MeSHOPs).
Academic Article	Single-cell analysis of human adipose tissue identifies depot and disease specific cell types.
Academic Article	High-resolution epigenome analysis in nasal samples derived from children with respiratory viral infections reveals striking changes upon SARS-CoV-2 infection.
Academic Article	Genomic answers for children: Dynamic analyses of >1000 pediatric rare disease genomes.
Academic Article	Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort.
Academic Article	Characterization and visualization of tandem repeats at genome scale.
Academic Article	Pangenome graphs improve the analysis of structural variants in rare genetic diseases.
Academic Article	Evolving epigenomics of immune cells at single-nucleus resolution in children en route to type 1 diabetes.

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